| |
| Award |
2007 William L. Garrison Award for Best Dissertation in Computational Geography - Marble Fund for Geographic Science of the Association of American Geographers (AAG)
[Flash EPFL, 30.05.2007, Régis Caloz] [Reflex Magazine, 06.2007 ] [Magazine Online dell'Università Cattolica di Piacenza, 05.2007] |
Main publications |
| Full papers |
| Kalbermatten, M., Van De Ville, D., Turberg, P., Joost, S. (submitted) Analysis of geomorphological and geological features in digital elevation models using the wavelet transform, Geomorphology |
| Joost, S. and Parisod, C. (submitted), Geographic science applied to population genomics: investigating the adaptation of living organisms to the environment, Annals of the Association of American Geographers |
| Manel, S., Joost, S., Epperson, B.K., Holderegger, R., Storfer, A., Rosenberg, M.S., Scribner, K., Bonin, A., Fortin, M.-J. (In press) Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field, Molecular Ecology |
| Joost, S., Colli, L., Baret, P.V., Garcia, J.F., Boettcher, P.J., Tixier-Boichard, M. , Ajmone-Marsan, P. & the GLOBALDIV Consortium (2010) Integrating geo-referenced multiscale and multidisciplinary data for the management of biodiversity in livestock genetic resources, Animal Genetics, Volume 41, Issue s1, DOI: 10.1111/j.1365-2052.2010.02037.x |
| Boettcher, P.J., Tixier-Boichard, M., Toro, M., Simianer, H., Eding, H., Gandini, G., Joost, S., Garcia, J.F., Colli, L., Ajmone-Marsan, P. & the GLOBALDIV Consortium (2010) Objectives, criteria and methods for priority setting in conservation of animal genetic resources, Animal Genetics, Volume 41, Issue s1, DOI: 10.1111/j.1365-2052.2010.02050.x |
| Parisod, C., Joost, S. (2010) Divergent selection in trailing versus leading edge populations of Biscutella laevigata, Annals of Botany, 4:655-660, doi: 10.1093/aob/mcq014, |
| Pariset, L., Joost, S., Ajmone Marsan, P., Valentini, A. (2009) Landscape genomics and biased FST approaches reveal Single Nucleotide Polymorphisms under selection in goat breeds of North-East Mediterranean, BMC Genetics, 10:7. |
| Joost, S. (2008) La dimension spatiale en écologie moléculaire: science de l'information géographique et conservation des ressources génétiques végétales et animales, Le Monde des Cartes, 198:51-58. |
| Joost, S., Kalbermatten, M., Bonin, A. (2008) Spatial Analysis Method (SAM): a software tool combining molecular and environmental data to identify candidate loci for selection, Molecular Ecology Resources, 8:957–960. |
| Joost, S., Bonin, A., Taberlet, P., Caloz, R. (2008) Un rôle pour la science de l'information géographique en écologie moléculaire: la détection de régions du génome soumises à la sélection naturelle, Revue Internationale de Géomatique, 2:215-237. |
Joost, S., Bonin, A., Bruford, M.W., Després, L., Conord, C., Erhardt, G., Taberlet, P., (2007) A Spatial Analysis Method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation, Molecular Ecology, 18:3955–3969.
[Le Temps du 17.08.2007] [SAM Software] |
| Bertaglia, M., Joost, S., Roosen, J., and the Econogene Consortium (2007) Identifying European Marginal Areas in the Context of Local Sheep and Goat Breeds Conservation: A Geographic Information System Approach, Agricultural Systems, 94:657-670. |
| Pariset, L., Cappuccio, I., Ajmone-Marsan, P., Bruford, M., Dunner, S., Cortes, O., Erhardt, G., Prinzenberg, E.-M., Gutscher, K., Joost, S., Pinto-Juma, G., Nijman, I.J., Lenstra, J.A., Perez, T., Valentini, A., and the Econogene Consortium (2006) Characterization of 37 Breed-Specific Single-Nucleotide Polymorphisms in Sheep, Journal of Heredity, 97:531-534. |
| Lassueur, T., Joost, S., Randin, C. (2006) Very high resolution digital elevation models: do they improve models of plant species distribution ? Ecological Modelling, 198:139-153. |
Pariset, L., Cappuccio, I., Ajmone Marsan, P., Dunner, S., Cortes, O., Erhardt, G., Lühken, G., Gutscher, K., Joost, S., Nijman, I.J., Lenstra, J.A., England, P.R., Zundel, S., Obexer-Ruff, G., Beja-Pereira, A., Valentini, A. and the Econogene Consortium (2006) Allele frequencies and diversity parameters of 27 single nucleotide polymorphisms within and across goat breeds, Molecular Ecology Notes, 6:992-997.
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| Pariset, L., Cappuccio, I., Joost, S., D’Andrea, M.S., Marletta, D., Ajmone Marsan, P., Valentini, A. and the Econogene Consortium (2006) Characterization of single nucleotide polymorphisms (SNPs) in sheep and their variation as an evidence of selection, Animal Genetics, 37:290-292. |
| Scott, E.C., Matzke, N.J., Branch, G., Steve et al. (2004) The Morphology of Steve, Annals of Improbable Research, July-August 2004 |
| Hussy C., Crivelli R., Joost S., Métral G. (2002) Foreigners in Switzerland, issues and territorial realities, Journal of Alpine Research, 3:81-98. |
| Joost, S., Dessemontet, P. (2000) Geographische Grenzen der Postleitzahlen und Integration statistischer Daten, Swiss Geomatics, 9:557-559. |
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| Books and book chapters |
| Joost, S., Pointet, A., Caloz, R. et Golay, F. (2009) De la physique expérimentale aux sciences et systèmes de l'information géographique, Ed. Lulu.com, London. |
| Joost, S. (2009) De la physique à la génomique environnementale, en passant par la science de l'information géographique, in: Joost, S., Pointet, A., Caloz, R. et Golay, F. (Eds), De la physique expérimentale aux sciences et systèmes de l'information géographique, Ed. Lulu.com, London. |
| Joost, S., Pointet, A. (2008) Animal farming and GIS service, in: A.Rosati, A.Tewolde, C.Mosconi (Eds), Animal production and animal science worldwide (WAAP book of the year 2007), Wageningen Academic Publishers, pp.175-185. |
| Joost, S. (2008) Outlook to possibilities and challenges in viewing and analysing different data sets for animal genetic resources management, in : D.Pilling, B.Rischkowsky, B.Scherf (Eds) Report of the FAO/WAAP Workshop on Production Environment Descriptors for Animal Genetic Resources held Caprarola, Italy, 6–8 May 2008, pp. 47-49. |
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| Conference & Workshop papers & proceedings |
| Joost, S., Negrini, R., Colli, L., Pellecchia, Mazza, R., Ajmone-Marsan, P., Milanesi, E., ECONOGENE Consortium (2010) Confronto tra distanze genetiche e distanze ecologiche tra razze di capre delle alpi svizzere e italiane, Convegno IREALP BIOD coltivare la biodiversità, June 10-11, Milano, Italy |
| Ajmone-Marsan, P., Colli, L., Pellecchia, M., Lucente, G., Mazza, R., Negrini, R., Joost, S., ECONOGENE Consortium e GLOBALDIV Consortium (2010) Conservazione sostenibile delle risorse genetiche animali, Convegno IREALP BIOD coltivare la biodiversità, June 10-11, Milano, Italy |
| Joost, S., Kalbermatten, M., Bezault, E. (2010) Nominal and ordinal predictors in logistic regression for the identification of adaptive loci in animal and plant populations, S4 Conference and Workshops on Geosimulations and Risks, June 9 to 11, University of Lausanne, Switzerland |
| Joost, S. (2010) Analyse spatiale et systèmes complexes pour l’optimisation de la localisation des activités commerciales, Séminaire de 3e cycle CUSO Les SIG au service du développement territorial, June 3-4, EPFL, Lausanne Switzerland |
| Joost, S., Matasci, G. (2010) An integrated sustainability index for the geo-monitoring of the Swiss Brown Original (cattle) local socio-economic, socio-demographic and environmental context, Second GLOBALDIV Workshop, May 5-6, FAO, Rome, Italy |
| Produit, T., Lachance-Bernard, N., Strano, E., Porta, S., Joost, S. (2010) A network based kernel density estimator applied to Barcelona economic activities, in: Taniar, D., Gervasi, O., Murgante, B., Pardede, E., Apduhan, B.O. (Eds) ICCSA 2010 Workshop on Geographical Analysis, Urban Modeling, Spatial statistics (GEO-AN-MOD 2010), The 2010 International Conference on Computational Science and its Application, March 23–26, Fukuoka, Japan, Springer-Verlag, Berlin Heidelberg |
| Kalbermatten, M., Van De Ville, D., Joost, S., Unser, M. , Golay, F. (2009) Laplace-gradient wavelet pyramid and multiscale tensor structures applied on high resolution DEMs, Geomorphometry 2009, August 31 - September 2, Zurich, Switzerland |
Joost, S., Negrini, R. (2009) Early stirrings of landscape genomics: Awaiting next-next generation sequencing platforms before take-off, Proceedings of the FAO/IAEA International Symposium on Sustainable Improvement of Animal Production and Health, 8-11 June 2009, Vienna, Austria |
| Joost, S., Colli, L., Ajmone Marsan, P., Baret et al. (2009) Integrating geo-referenced multiscale and multidisciplinary data for the management of biodiversity in livestock genetic resources, First GLOBALDIV Workshop, University of Technology and Life Sciences, Bydgoszcz, Poland |
| Joost, S. (2008) A landscape genomics approach to understanding and predicting species distribution, European Science Foundation (ESF) funded Workshop on Landscape Genetics within the Con Gen programme, St-Hugues de Biviers/Grenoble, France |
| Joost, S. (2008) MFSA : a research center to promote the role of Geographic Science in interdisciplinary research : towards scientific discovery, IGU Commission on Applied Geography, 31st International Geographical Congress, 12-15 August, Tunis, Tunisia |
| Joost, S. (2008) Exploring the Geographic Dimension of Genetic Data, Annual Conference of the Association of American Geographers (AAG), 15-18 April, Boston, USA |
| Joost, S., Bonin, A. (2007) Quantitative Geography and Genomics : Spatial analysis to detect signatures of selection along a gradient of altitude in the common frog (Rana temporaria), Proceedings of the 15th European Colloquium on Theoretical and Quantitative Geography, 7-11 September 2007, Montreux, Switzerland |
| Joost, S., Pointet, A. (2007) A dedicated Geographic Exploration Interface for the monitoring of worldwide Farm Animal Genetic Resources, Proceedings of Geocomputation 2007, 3-5 September 2007, NUI Maynooth, Ireland |
| Joost, S., Negrini, R., Milanesi, E., Pellecchia, M., Ajmone Marsan, P., The Econogene Consortium (2007) Detecting footprints of selection in Ovies aries by a spatial analysis approach, Italian Journal of Animal Science, 6:171-173, supplement 1, Proceedings of the ASPA 17th Congress, May 29-June 1, Alghero, Italy |
| Joost, S. (2007) GIScience joining with molecular biology: a novel approach of detecting signatures of natural selection within the genome, 2007 Annual Conference of the Association of American Geographers (AAG), San Francisco, USA |
| Després, L., Joost, S., Taberlet, P. (2007) Détection de locus adaptatifs et des facteurs environnementaux sélectifs par combinaison d’une approche spatiale et d’une approche de génomique des populations : application au grand charançon du pin, Conférences Jacques Monod, Génomique évolutive, CNRS, 2-6 mai 2007, Roscoff, France |
| Joost, S. and the Econogene Consortium (2005) Combining biotechnologies and GIScience for livestock genetic resources conservation, 8th AGILE Conference on Geographic Information Science, May 26-28, Estoril, Portugal |
| Joost, S. and the Econogene Consortium (2005) Combining biotechnologies and GIScience to contribute to sheep and goat genetic resources conservation, in: Proceedings of the International Workshop on the Role of Biotechnology for the Characterisation and Conservation of Crop, Forestry, Animal and Fishery Genetic Resources, The FAO Working Group on Biotechnology, pp.109-116, Torino, Italy |
| Negrini, R., Milanesi, E., Pellecchia, M., Patrini, M., Crepaldi, P., Joost, S., Ajmone Marsan, P., the Econogene Consortium (2005) Pattern of ancient goat migration revealed by AFLP molecular markers, Italian Journal of Animal Science, 4:55-57, Proceedings of the ASPA 16th Congress, June 28-30, Torino, Italy |
| Joost S., Negrini R., Milanesi E., Caloz R., Ajmone-Marsan P. and the Econogene Consortium (2004) Relationships between ecological distance and genetic distance among goat breeds of Italy and Switzerland, Proceedings of the 55th EAAP Conference, Bled, Slovenia |
| Negrini R., Joost S., Milanesi E., Bernardi J., Pellecchia M., Patrini M., Caloz R., Ajmone-Marsan P. and the Econogene Consortium (2004) Genetic diversity of european goats as measured by AFLP markers, Proceedings of the 55th EAAP Conference, Bled, Slovenia |
| Ajmone-Marsan P., Negrini R., Joost S., Silveri L., Milanesi E., Caloz R., and the Econogene Consortium (2004) A map of diversity of european and mediterranean sheep as revealed by AFLP markers, Proceedings of the 29th ISAG meeting, Tokyo, Japan |
| Ertz,O., Joost,S., Rappo,D. (2002) Towards Geoservices Portals, WGIS trends for Business Applications, in: Post-proceedings of the Second International Conference on Web Information Systems Engineering (WISE 2001), IEEE Computer Society Press, vol. 2, pp.102-106, Los Alamitos, USA |
| Joost, S. (2001) Essai de clarification au sein de la hiérarchie des méthodes d'analyse spatiale appliquées aux activités commerciales, Carto 2001, The Canadian Cartographic Association (CCA), Montreal, Canada |
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| Invited talks |
| Joost, S. (2010) And a three, and a four, and a 001, S4 Conference and Workshops on Geosimulations and Risks, June 9 to 11, University of Lausanne, Switzerland |
| Joost, S. (2009) Early stirrings of landscape genomics: Awaiting next-next generation sequencing before take-off, FAO/IAEA International Symposium on Sustainable Improvement of Animal Production and Health, 8-11 June 2009, Vienna, Austria |
| Joost, S. (2005) GIScience and Genetics : Exploiting the geographical dimension of molecular data, Proceedings of the Second IPSo Congress on Proteomics and Genomics, Viterbo, Italy |
| Joost, S., and the Econogene Consortium (2005) Exploratory spatial analysis applied to the investigation of large molecular data sets, Xth spanish conference of biometrics, Oviedo, Spain [Libro de resumenes, Editiones de la Universidad de Oviedo, p.111, ISBN 84-8317-486-3] |
| |
| Ph.D. thesis |
| The Geographic Dimension of Genetic Diversity : a GIScience Contribution for the Conservation of Animal Genetic Resources, EPFL, 2006 |
| |
| Contribution to publications in the context of International Consortia |
| Full papers |
| Groeneveld, L. F., Lenstra, J. A., Eding, H., Toro, M. A., Scherf, B., Pilling, D., Negrini, R., Finlay, E. K., Jianlin, H., Groeneveld, E., Weigend, S. & the GLOBALDIV Consortium (2010) Genetic diversity in farm animals – a review, Animal Genetics, Volume 41, Issue s1, DOI: 10.1111/j.1365-2052.2010.02038.x |
| Ajmone-Marsan, P. & the GLOBALDIV Consortium (2010) A global view of livestock biodiversity and conservation, Animal Genetics, Volume 41, Issue s1, DOI: 10.1111/j.1365-2052.2010.02036.x |
| Pariset,L., Cuteri, A., Ligda,C., Ajmone-Marsan, P., Valentini, A. and ECONOGENE Consortium (2009) Geographical patterning of sixteen goat breeds from Italy, Albania and Greece assessed by Single Nucleotide Polymorphisms, BMC Ecology, 9:20. |
| Naderi, S., Hamid-Reza Rezaei, Pierre Taberlet, Stéphanie Zundel, Seyed-Abbas Rafat, Hamid-Reza Naghash, Mohamed A. A. El-Barody, Okan Ertugrul, François Pompanon, and for the Econogene Consortium (2007) Large-Scale Mitochondrial DNA Analysis of the Domestic Goat Reveals Six Haplogroups with High Diversity, PLoS One, 2(10): e1012. |
| Negrini, R., Nijman, I.J., Milanesi, E., Moazami-Goudarzi, K., Williams, J.L. Erhardt, G., Dunner, S., Rodellar, C., Valentini, A., Bradley, D.G., Olsaker, I., Kantanen, J., Ajmone-Marsan, P., Lenstra, J.A. (2007) European Cattle Genetic Diversity Consortium. Differentiation of European cattle by AFLP fingerprinting. Animal Genetics 38(1):60-6. |
| Canon, J., Garcia, D., Garcia-Atance, M.A., Obexer-Ruff, G., Lenstra, J.A., Ajmone-Marsan, P., Dunner, S. and ECONOGENE Consortium (2006) Geographical partitioning of goat diversity in Europe and the Middle East, Animal Genetics 37(4):327-34. |
| Pariset, L., Cappuccio, I., Ajmone Marsan, P., Dunner, S., Luikart, G., England, P.R., Obexer-Ruff, G., Peter, C., Marletta, D., Pilla, F., Valentini, A., and ECONOGENE Consortium (2006) Assessment of population structure by single nucleotide polymorphisms (SNPs) in goat breeds, J Chromatogr B Analyt Technol Biomed Life Sci., 833(1):117-20. |
| Conference papers |
| ... |
| Posters |
| Lenstra, J.A., and European Cattle Genetic Diversity Consortium (2009) Geographic patterns of molecular diversity and paternal lineages of European cattle, Bovine Genome Consortium meeting, Cold Spring Harbor (NY), May 9 - 11, 2009. |
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